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Rpl17 ribosomal protein L17 [ Mus musculus (house mouse) ]

Gene ID: 319195, updated on 17-Nov-2020

Summary

Official Symbol
Rpl17provided by MGI
Official Full Name
ribosomal protein L17provided by MGI
Primary source
MGI:MGI:2448270
See related
Ensembl:ENSMUSG00000062328
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in liver E14 (RPKM 250.7), bladder adult (RPKM 230.9) and 25 other tissues See more

Genomic context

See Rpl17 in Genome Data Viewer
Location:
18; 18 E3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75132049..75136452)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (74998978..75003381)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (75160131..75163035)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9030625G05 gene Neighboring gene lipase, endothelial Neighboring gene small nucleolar RNA, C/D box 58B Neighboring gene predicted gene, 23301 Neighboring gene cDNA sequence BC031181 Neighboring gene predicted gene, 26202 Neighboring gene dymeclin Neighboring gene predicted gene, 52344

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

  • Homologs of the Rpl17 gene: The Rpl17 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, and rice.
  • Orthologs

Clone Names

  • MGC103289, MGC118163

Gene Ontology Provided by MGI

Function Evidence Code Pubs
large ribosomal subunit rRNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
A band ISO
Inferred from Sequence Orthology
more info
 
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 
large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
polysome ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
synapse EXP
Inferred from Experiment
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002239.3NP_001002239.2  60S ribosomal protein L17

    See identical proteins and their annotated locations for NP_001002239.2

    Status: VALIDATED

    Source sequence(s)
    AA407762, AK002770, BY031981
    Consensus CDS
    CCDS29344.1
    UniProtKB/TrEMBL
    Q6ZWZ7
    Related
    ENSMUSP00000078654.5, ENSMUST00000079716.5
    Conserved Domains (1) summary
    PTZ00178
    Location:1165
    PTZ00178; 60S ribosomal protein L17; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    75132049..75136452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006525996.1XP_006526059.1  60S ribosomal protein L17 isoform X2

    See identical proteins and their annotated locations for XP_006526059.1

    UniProtKB/TrEMBL
    Q6ZWZ7
    Related
    ENSMUSP00000157556.1, ENSMUST00000237431.1
    Conserved Domains (1) summary
    PTZ00178
    Location:1165
    PTZ00178; 60S ribosomal protein L17; Provisional
  2. XM_036161166.1XP_036017059.1  60S ribosomal protein L17 isoform X3

    Conserved Domains (1) summary
    PTZ00178
    Location:1127
    PTZ00178; 60S ribosomal protein L17; Provisional
  3. XM_017317919.3XP_017173408.1  60S ribosomal protein L17 isoform X2

    UniProtKB/TrEMBL
    Q6ZWZ7
    Conserved Domains (1) summary
    PTZ00178
    Location:1165
    PTZ00178; 60S ribosomal protein L17; Provisional
  4. XM_017317918.2XP_017173407.1  60S ribosomal protein L17 isoform X1

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