Rsph9 radial spoke head component 9 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Rsph9provided by RGD
Official Full Name: radial spoke head component 9provided by RGD
Primary source: RGD:1310693
See related: EnsemblRapid:ENSRNOG00000019474 AllianceGenome:RGD:1310693
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1310693
Summary: Predicted to be involved in cilium assembly and cilium movement involved in cell motility. Predicted to be located in 9+2 motile cilium. Predicted to be part of radial spoke. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Orthologous to human RSPH9 (radial spoke head component 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Testes (RPKM 90.7), Lung (RPKM 49.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 9q12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (22337681..22350515)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (14840115..14852950)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (17224589..17245093)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in axonemal central apparatus assembly	ISO Inferred from Sequence Orthology more info
involved_in axoneme assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in axoneme assembly	ISO Inferred from Sequence Orthology more info
involved_in cilium movement	ISO Inferred from Sequence Orthology more info
involved_in cilium movement involved in cell motility	IBA Inferred from Biological aspect of Ancestor more info
involved_in motile cilium assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in radial spoke assembly	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in 9+2 motile cilium	ISO Inferred from Sequence Orthology more info
is_active_in axoneme	IBA Inferred from Biological aspect of Ancestor more info
located_in axoneme	ISO Inferred from Sequence Orthology more info
located_in kinocilium	IEA Inferred from Electronic Annotation more info
located_in motile cilium	ISO Inferred from Sequence Orthology more info
part_of radial spoke	ISO Inferred from Sequence Orthology more info
part_of radial spoke head	ISO Inferred from Sequence Orthology more info
part_of radial spoke head 1	ISO Inferred from Sequence Orthology more info
part_of radial spoke head 3	ISO Inferred from Sequence Orthology more info
located_in sperm flagellum	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: radial spoke head protein 9 homolog

Names: radial spoke head 9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001108205.2 → NP_001101675.2 radial spoke head protein 9 homolog

Status: VALIDATED

Source sequence(s)

JAXUCZ010000009

UniProtKB/TrEMBL

A0A0G2KAI9, A6JIT7, A6JIT8, D4A5Y7

Related

ENSRNOP00000075414.2, ENSRNOT00000080816.3

Conserved Domains (1) summary

pfam04712
Location:17 → 274

Radial_spoke; Radial spokehead-like protein