Format

Send to:

Choose Destination

CDR2L cerebellar degeneration related protein 2 like [ Homo sapiens (human) ]

Gene ID: 30850, updated on 1-Jun-2020

Summary

Official Symbol
CDR2Lprovided by HGNC
Official Full Name
cerebellar degeneration related protein 2 likeprovided by HGNC
Primary source
HGNC:HGNC:29999
See related
Ensembl:ENSG00000109089
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HUMPPA
Expression
Ubiquitous expression in duodenum (RPKM 11.0), stomach (RPKM 7.1) and 23 other tissues See more
Orthologs

Genomic context

See CDR2L in Genome Data Viewer
Location:
17q25.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (74987632..75005800)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (72983727..73001895)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene otopetrin 3 Neighboring gene HID1 domain containing Neighboring gene HID1 antisense RNA 1 Neighboring gene mitochondrial ribosomal protein L58 Neighboring gene RNA, U6 small nuclear 362, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
cerebellar degeneration-related protein 2-like
Names
paraneoplastic 62 kDa antigen
paraneoplastic antigen

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014603.3NP_055418.2  cerebellar degeneration-related protein 2-like

    See identical proteins and their annotated locations for NP_055418.2

    Status: VALIDATED

    Source sequence(s)
    AC087651, AW239343, BC013105, BC047534
    Consensus CDS
    CCDS11710.2
    UniProtKB/Swiss-Prot
    Q86X02
    UniProtKB/TrEMBL
    A0A024R8R6
    Related
    ENSP00000336587.5, ENST00000337231.5
    Conserved Domains (1) summary
    COG1196
    Location:2241
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    74987632..75005800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006721852.3XP_006721915.1  cerebellar degeneration-related protein 2-like isoform X1

    Conserved Domains (1) summary
    TIGR02168
    Location:23225
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Support Center