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GPR171 G protein-coupled receptor 171 [ Homo sapiens (human) ]

Gene ID: 29909, updated on 11-Jun-2021

Summary

Official Symbol
GPR171provided by HGNC
Official Full Name
G protein-coupled receptor 171provided by HGNC
Primary source
HGNC:HGNC:30057
See related
Ensembl:ENSG00000174946 MIM:618925
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
H963
Expression
Biased expression in appendix (RPKM 5.9), lymph node (RPKM 4.6) and 12 other tissues See more
Orthologs
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Genomic context

See GPR171 in Genome Data Viewer
Location:
3q25.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (151197754..151203674, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (150915619..150921003, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene clarin 1 Neighboring gene CLRN1 antisense RNA 1 Neighboring gene mediator complex subunit 12L Neighboring gene RNA, 5S ribosomal pseudogene 145 Neighboring gene purinergic receptor P2Y14 Neighboring gene SET pseudogene 11 Neighboring gene G protein-coupled receptor 87

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables G protein-coupled purinergic nucleotide receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables G protein-coupled receptor activity NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane NAS
Non-traceable Author Statement
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
probable G-protein coupled receptor 171
Names
F730001G15Rik
G-protein coupled receptor H963
platelet activating receptor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013308.4NP_037440.3  probable G-protein coupled receptor 171

    See identical proteins and their annotated locations for NP_037440.3

    Status: VALIDATED

    Source sequence(s)
    AA353758, AC078816, AF002986, BC036815
    Consensus CDS
    CCDS3155.1
    UniProtKB/Swiss-Prot
    O14626
    Related
    ENSP00000308479.5, ENST00000309180.6
    Conserved Domains (1) summary
    cd15167
    Location:15296
    7tmA_GPR171; orphan G protein-coupled receptor 171, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    151197754..151203674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005247402.3XP_005247459.1  probable G-protein coupled receptor 171 isoform X1

    See identical proteins and their annotated locations for XP_005247459.1

    UniProtKB/Swiss-Prot
    O14626
    Conserved Domains (1) summary
    cd15167
    Location:15296
    7tmA_GPR171; orphan G protein-coupled receptor 171, member of the class A family of seven-transmembrane G protein-coupled receptors
  2. XM_017006274.1XP_016861763.1  probable G-protein coupled receptor 171 isoform X1

    UniProtKB/Swiss-Prot
    O14626
    Conserved Domains (1) summary
    cd15167
    Location:15296
    7tmA_GPR171; orphan G protein-coupled receptor 171, member of the class A family of seven-transmembrane G protein-coupled receptors
  3. XM_005247403.3XP_005247460.1  probable G-protein coupled receptor 171 isoform X1

    See identical proteins and their annotated locations for XP_005247460.1

    UniProtKB/Swiss-Prot
    O14626
    Conserved Domains (1) summary
    cd15167
    Location:15296
    7tmA_GPR171; orphan G protein-coupled receptor 171, member of the class A family of seven-transmembrane G protein-coupled receptors
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