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IGKV1D-39 immunoglobulin kappa variable 1D-39 [ Homo sapiens (human) ]

Gene ID: 28893, updated on 8-Jul-2021

Summary

Official Symbol
IGKV1D-39provided by HGNC
Official Full Name
immunoglobulin kappa variable 1D-39provided by HGNC
Primary source
HGNC:HGNC:5756
See related
Ensembl:ENSG00000251546 IMGT/GENE-DB:IGKV1D-39
Gene type
other
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
O2; IGKV1D39
Annotation information
Annotation category: partial on reference assembly
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Genomic context

See IGKV1D-39 in Genome Data Viewer
Location:
2p11.2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (89862505..89862979)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89901315..89901789)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa locus Neighboring gene uncharacterized LOC105374862 Neighboring gene immunoglobulin kappa variable 2D-40 Neighboring gene immunoglobulin kappa variable 2D-38 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-37 (non-functional)

Genomic regions, transcripts, and products

General gene information

Other Names

  • Ig kappa chain V-I region Daudi

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables antigen binding NAS
Non-traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in immune response NAS
Non-traceable Author Statement
more info
PubMed 
involved_in immunoglobulin production IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region NAS
Non-traceable Author Statement
more info
PubMed 
located_in extracellular region TAS
Traceable Author Statement
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of immunoglobulin complex IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane TAS
Traceable Author Statement
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000833.2 

    Range
    385877..386351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    89862505..89862979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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