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IGKV2D-40 immunoglobulin kappa variable 2D-40 [ Homo sapiens (human) ]

Gene ID: 28878, updated on 10-Oct-2023

Summary

Official Symbol
IGKV2D-40provided by HGNC
Official Full Name
immunoglobulin kappa variable 2D-40provided by HGNC
Primary source
HGNC:HGNC:5804
See related
Ensembl:ENSG00000251039 IMGT/GENE-DB:IGKV2D-40; AllianceGenome:HGNC:5804
Gene type
other
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
O1; IGKV2D40
Summary
Predicted to be involved in immune response. Located in blood microparticle and extracellular exosome. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See IGKV2D-40 in Genome Data Viewer
Location:
2p11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (89851758..89852491)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (90407018..90407751)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89890568..89891301)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa locus Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89850195-89851044 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89851045-89851894 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89851895-89852742 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89852743-89853592 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89853593-89854440 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89859347-89859897 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89860208-89860918 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89860919-89861628 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89864940-89865490 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89868115-89868990 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89867239-89868114 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89866363-89867238 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89869865-89870740 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89870741-89871614 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89871615-89872490 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:89872491-89873364 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:89873365-89874240 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89874241-89875115 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89875116-89875990 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89875991-89876865 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89876866-89877741 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89877742-89878616 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89878617-89879491 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:89879492-89880365 Neighboring gene uncharacterized LOC105374862 Neighboring gene ATP binding cassette subfamily D member 1 pseudogene 1 Neighboring gene immunoglobulin kappa variable 1D-39 Neighboring gene immunoglobulin kappa variable 2D-38 (pseudogene)

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000833.2 

    Range
    396365..397098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    89851758..89852491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    90407018..90407751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)