U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPATA31E1 SPATA31 subfamily E member 1 [ Homo sapiens (human) ]

Gene ID: 286234, updated on 22-Sep-2022

Summary

Official Symbol
SPATA31E1provided by HGNC
Official Full Name
SPATA31 subfamily E member 1provided by HGNC
Primary source
HGNC:HGNC:26672
See related
Ensembl:ENSG00000177992 AllianceGenome:HGNC:26672
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf79; FAM75E1
Summary
Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 4.8) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SPATA31E1 in Genome Data Viewer
Location:
9q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (87882877..87888903)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (100036904..100042930)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (90497792..90503818)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987091 Neighboring gene uncharacterized LOC497256 Neighboring gene uncharacterized LOC124902199 Neighboring gene SPATA31 subfamily C member 1 Neighboring gene zinc finger protein 598, E3 ubiquitin ligase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ35866

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spermatogenesis-associated protein 31E1
Names
FAM75-like protein C9orf79
XXyac-YM21GA2.5
family with sequence similarity 75, member E1
protein FAM75E1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178828.5NP_849150.3  spermatogenesis-associated protein 31E1

    See identical proteins and their annotated locations for NP_849150.3

    Status: VALIDATED

    Source sequence(s)
    AK125845, AL772337, AL834438
    Consensus CDS
    CCDS6676.1
    UniProtKB/Swiss-Prot
    Q6ZUB1, Q8ND27
    Related
    ENSP00000322640.5, ENST00000325643.6
    Conserved Domains (2) summary
    pfam14650
    Location:422789
    FAM75; FAM75 family
    pfam15371
    Location:116183
    DUF4599; Domain of unknown function (DUF4599)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    87882877..87888903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    100036904..100042930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)