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LINC00174 long intergenic non-protein coding RNA 174 [ Homo sapiens (human) ]

Gene ID: 285908, updated on 1-Jun-2020

Summary

Official Symbol
LINC00174provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 174provided by HGNC
Primary source
HGNC:HGNC:27788
See related
Ensembl:ENSG00000179406
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00174
Expression
Broad expression in testis (RPKM 4.6), skin (RPKM 2.7) and 24 other tissues See more

Genomic context

See LINC00174 in Genome Data Viewer
Location:
7q11.21
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (66376044..66400408, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (65841031..65865395, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene CGRP receptor component Neighboring gene tyrosylprotein sulfotransferase 1 Neighboring gene RNA, U6 small nuclear 313, pseudogene Neighboring gene general transcription factor IIi pseudogene 9 Neighboring gene S-phase kinase associated protein 1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026873.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK091213, AK124597, AW008847, BC020399, DB067709
    Related
    ENST00000421767.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    66376044..66400408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_181722.2: Suppressed sequence

    Description
    NM_181722.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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