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VSTM2A-OT1 VSTM2A overlapping transcript 1 [ Homo sapiens (human) ]

Gene ID: 285878, updated on 10-Dec-2024

Summary

Official Symbol
VSTM2A-OT1provided by HGNC
Official Full Name
VSTM2A overlapping transcript 1provided by HGNC
Primary source
HGNC:HGNC:50770
See related
Ensembl:ENSG00000224223 AllianceGenome:HGNC:50770
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GS1-18A18.1
Expression
Biased expression in brain (RPKM 2.1), adrenal (RPKM 1.3) and 5 other tissues See more
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Genomic context

See VSTM2A-OT1 in Genome Data Viewer
Location:
7p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (54556970..54571726)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (54716939..54731660)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (54624663..54639419)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene solute carrier family 25 member 5 pseudogene 3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:54582481-54583680 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:54609706-54610206 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:54612500-54613012 Neighboring gene V-set and transmembrane domain containing 2A Neighboring gene uncharacterized LOC124901635 Neighboring gene RNA, U6 small nuclear 1125, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038994.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011228, BC037834, BI756787
    Related
    ENST00000456049.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    54556970..54571726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    54716939..54731660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)