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VSTM2A-OT1 VSTM2A overlapping transcript 1 [ Homo sapiens (human) ]

Gene ID: 285878, updated on 10-Dec-2019

Summary

Official Symbol
VSTM2A-OT1provided by HGNC
Official Full Name
VSTM2A overlapping transcript 1provided by HGNC
Primary source
HGNC:HGNC:50770
See related
Ensembl:ENSG00000224223
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GS1-18A18.1
Expression
Biased expression in brain (RPKM 2.1), adrenal (RPKM 1.3) and 5 other tissues See more

Genomic context

See VSTM2A-OT1 in Genome Data Viewer
Location:
7p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (54556970..54571726)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (54624663..54639419)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1445 Neighboring gene solute carrier family 25 member 5 pseudogene 3 Neighboring gene V-set and transmembrane domain containing 2A Neighboring gene RNA, U6 small nuclear 1125, pseudogene Neighboring gene ribosomal protein L31 pseudogene 35

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038994.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011228, BC037834, BI756787
    Related
    ENST00000456049.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    54556970..54571726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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