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LINC02880 long intergenic non-protein coding RNA 2880 [ Homo sapiens (human) ]

Gene ID: 285759, updated on 11-Jun-2021

Summary

Official Symbol
LINC02880provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2880provided by HGNC
Primary source
HGNC:HGNC:54660
See related
Ensembl:ENSG00000175967
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lung (RPKM 1.3), placenta (RPKM 1.2) and 13 other tissues See more
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Genomic context

See LINC02880 in Genome Data Viewer
Location:
6q21
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (113904387..113921642)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (114225551..114242806)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene myristoylated alanine rich protein kinase C substrate Neighboring gene MARCKS cis regulating lncRNA promoter of cytokines and inflammation Neighboring gene histone deacetylase 2 Neighboring gene HDAC2 and HS3ST5 antisense RNA 2 Neighboring gene NUDT19 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027060.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK091822, BC093647
    Related
    ENST00000314481.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    113904387..113921642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039528.1: Suppressed sequence

    Description
    NM_001039528.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate, and lacks support for the protein.
  2. NM_173673.1: Suppressed sequence

    Description
    NM_173673.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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