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STARD7-AS1 STARD7 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 285033, updated on 10-Oct-2023

Summary

Official Symbol
STARD7-AS1provided by HGNC
Official Full Name
STARD7 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40827
See related
AllianceGenome:HGNC:40827
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 7.0), colon (RPKM 4.9) and 24 other tissues See more
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Genomic context

Location:
2q11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (96208416..96242623)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (96715024..96749231)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (96874154..96908361)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96798301-96798801 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96800355-96800854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16189 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11752 Neighboring gene astacin like metalloendopeptidase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11754 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11753 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16191 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96810561-96811062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:96813301-96814190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16197 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:96818462-96819055 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16200 Neighboring gene Sharpr-MPRA regulatory region 4518 Neighboring gene dual specificity phosphatase 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:96824357-96824894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16202 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16203 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16204 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16205 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11756 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16206 Neighboring gene StAR related lipid transfer domain containing 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11757 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:96874259-96874849 Neighboring gene small nucleolar RNA, H/ACA box 112 Neighboring gene Sharpr-MPRA regulatory region 4718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16208 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16209 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16210 Neighboring gene VISTA enhancer hs1919 Neighboring gene transmembrane protein 127 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11759 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11761 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16212 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16213 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:96933152-96934351 Neighboring gene cytosolic iron-sulfur assembly component 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046322.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012307, AI218644, AK057419, AK311432

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    96208416..96242623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    96715024..96749231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001037228.1: Suppressed sequence

    Description
    NM_001037228.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.