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AATBC apoptosis associated transcript in bladder cancer [ Homo sapiens (human) ]

Gene ID: 284837, updated on 13-Feb-2019

Summary

Official Symbol
AATBCprovided by HGNC
Official Full Name
apoptosis associated transcript in bladder cancerprovided by HGNC
Primary source
HGNC:HGNC:51526
See related
Ensembl:ENSG00000215458
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 2.8), urinary bladder (RPKM 1.3) and 13 other tissues See more

Genomic context

See AATBC in Genome Data Viewer
Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 21 NC_000021.9 (43805758..43812567, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (45225639..45232448, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein 97 pseudogene 1 Neighboring gene ribosomal RNA processing 1 Neighboring gene myosin light chain 6 pseudogene 1 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene RNA, U6 small nuclear 859, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026961.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK128598, AP001053, BC031911, BC034348
    Related
    ENST00000400385.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p12 Primary Assembly

    Range
    43805758..43812567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_194310.1: Suppressed sequence

    Description
    NM_194310.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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