U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00323 long intergenic non-protein coding RNA 323 [ Homo sapiens (human) ]

Gene ID: 284835, updated on 17-Jun-2024

Summary

Official Symbol
LINC00323provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 323provided by HGNC
Primary source
HGNC:HGNC:19720
See related
Ensembl:ENSG00000226496 AllianceGenome:HGNC:19720
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRED42; C21orf130; NCRNA00323
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC00323 in Genome Data Viewer
Location:
21q22.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (41141500..41148064, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (39529819..39536384, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (42513427..42519991, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene DS cell adhesion molecule Neighboring gene uncharacterized LOC124905066 Neighboring gene NANOG hESC enhancer GRCh37_chr21:42241274-42241775 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42296237-42296738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42296739-42297238 Neighboring gene NANOG hESC enhancer GRCh37_chr21:42306817-42307318 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:42308234-42309433 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:42326589-42327160 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:42331949-42332650 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:42339602-42340102 Neighboring gene yrdC N(6)-threonylcarbamoyltransferase domain containing pseudogene 3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:42424381-42425580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42474333-42474833 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:42513074-42513270 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr21:42519321-42519905 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:42551642-42552451 Neighboring gene microRNA 3197 Neighboring gene beta-secretase 2 Neighboring gene placenta enriched 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024100.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK094492
    Related
    ENST00000441268.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    41141500..41148064 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    39529819..39536384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)