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C20orf197 chromosome 20 putative open reading frame 197 [ Homo sapiens (human) ]

Gene ID: 284756, updated on 11-Oct-2019

Summary

Official Symbol
C20orf197provided by HGNC
Official Full Name
chromosome 20 putative open reading frame 197provided by HGNC
Primary source
HGNC:HGNC:26601
See related
Ensembl:ENSG00000176659
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See C20orf197 in Genome Data Viewer
Location:
20q13.33
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (60047074..60072987)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (58630980..58648008)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 217 member B Neighboring gene protein phosphatase 1 regulatory subunit 3D Neighboring gene cadherin 26 Neighboring gene uncharacterized LOC107985429 Neighboring gene uncharacterized LOC729296

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • uncharacterized protein C20orf197

Clone Names

  • FLJ33860, MGC120496

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126504.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) shares the 5' terminal exon but lacks the remaining exons, and instead contains an alternate 3' terminal exon, compared to variant 1. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
    Source sequence(s)
    AK091179, BU730836
    Related
    ENST00000647608.1
  2. NR_161291.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132822
    Related
    ENST00000625080.1
  3. NR_161292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132822
    Related
    ENST00000660831.1
  4. NR_161293.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132822

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    60047074..60072987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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