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ODF3L2 outer dense fiber of sperm tails 3 like 2 [ Homo sapiens (human) ]

Gene ID: 284451, updated on 26-Oct-2022

Summary

Official Symbol
ODF3L2provided by HGNC
Official Full Name
outer dense fiber of sperm tails 3 like 2provided by HGNC
Primary source
HGNC:HGNC:26841
See related
Ensembl:ENSG00000181781 AllianceGenome:HGNC:26841
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C19orf19
Summary
Located in cytoplasmic microtubule. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 4.1) See more
Orthologs
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Genomic context

See ODF3L2 in Genome Data Viewer
Location:
19p13.3
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (463361..491624, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (414863..444061, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (463361..491624, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene proline-rich proteoglycan 2-like Neighboring gene SHC adaptor protein 2 Neighboring gene RNA, 5S ribosomal pseudogene 462 Neighboring gene uncharacterized LOC124904608 Neighboring gene MADCAM1 antisense RNA 1 Neighboring gene mucosal vascular addressin cell adhesion molecule 1 Neighboring gene tubulin polyglutamylase complex subunit 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40059, MGC129962, MGC129963

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasmic microtubule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasmic microtubule IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
outer dense fiber protein 3-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001385597.1NP_001372526.1  outer dense fiber protein 3-like protein 2 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
    Source sequence(s)
    AC005775, AC006124
    Consensus CDS
    CCDS92474.1
    Related
    ENSP00000372143.2, ENST00000382696.7
  2. NM_001385598.1NP_001372527.1  outer dense fiber protein 3-like protein 2 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3-5 all encode the same isoform (c).
    Source sequence(s)
    AC005775, AC006124
  3. NM_001385599.1NP_001372528.1  outer dense fiber protein 3-like protein 2 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3-5 all encode the same isoform (c).
    Source sequence(s)
    AC005775, AC006124
  4. NM_001385600.1NP_001372529.1  outer dense fiber protein 3-like protein 2 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3-5 all encode the same isoform (c).
    Source sequence(s)
    AC005775, AC006124
  5. NM_182577.3NP_872383.1  outer dense fiber protein 3-like protein 2 isoform a

    See identical proteins and their annotated locations for NP_872383.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    AC005775, AC006124
    Consensus CDS
    CCDS12027.1
    UniProtKB/Swiss-Prot
    Q3SX64, Q8N1L2
    Related
    ENSP00000318029.2, ENST00000315489.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    463361..491624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005259545.6XP_005259602.1  outer dense fiber protein 3-like protein 2 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    414863..444061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)