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PICART1 p53 inducible cancer associated RNA transcript 1 [ Homo sapiens (human) ]

Gene ID: 284080, updated on 17-Sep-2024

Summary

Official Symbol
PICART1provided by HGNC
Official Full Name
p53 inducible cancer associated RNA transcript 1provided by HGNC
Primary source
HGNC:HGNC:27576
See related
Ensembl:ENSG00000246640 AllianceGenome:HGNC:27576
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See PICART1 in Genome Data Viewer
Location:
17q21.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (50050349..50055739, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (50915814..50921204, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (48127713..48133103, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8676 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12375 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:48048476-48049098 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:48049099-48049721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48053397-48053960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48053961-48054524 Neighboring gene distal-less homeobox 4 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr17:48061323-48061824 and GRCh37_chr17:48061825-48062324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48066497-48066998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48066999-48067498 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8677 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48072293-48072875 Neighboring gene distal-less homeobox 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48111925-48112721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48125618-48126247 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48131902-48132428 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48139516-48140016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:48140017-48140517 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:48141472-48142671 Neighboring gene integrin subunit alpha 3 Neighboring gene uncharacterized LOC124904024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12377

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038230.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009720, AK096761
    Related
    ENST00000499842.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    50050349..50055739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    50915814..50921204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)