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LINC00304 long intergenic non-protein coding RNA 304 [ Homo sapiens (human) ]

Gene ID: 283860, updated on 17-Sep-2024

Summary

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Official Symbol
LINC00304provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 304provided by HGNC
Primary source
HGNC:HGNC:26713
See related
Ensembl:ENSG00000180422 AllianceGenome:HGNC:26713
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C16orf81; NCRNA00304
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00304 in Genome Data Viewer
Location:
16q24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (89159220..89163675)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (95239246..95243609)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (89225628..89230083)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89154413-89154912 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11393 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11394 Neighboring gene acyl-CoA synthetase family member 3 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:89180375-89181574 Neighboring gene Sharpr-MPRA regulatory region 10518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89200477-89201376 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_46429 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89226077-89226576 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89233179-89234027 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89234028-89234875 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7893 Neighboring gene long intergenic non-protein coding RNA 2138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89241373-89241872 Neighboring gene cadherin 15 Neighboring gene Sharpr-MPRA regulatory region 11767 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11396 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89260181-89260846

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Androgen-responsive lncRNA LINC00304 promotes cell cycle and proliferation via regulating CCNA1. Zhang P, et al. Prostate, 2019 Jun. PMID 31012142
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ36701

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024347.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009113, AK094020
    Related
    ENST00000321214.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    89159220..89163675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    95239246..95243609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173617.1: Suppressed sequence

    Description
    NM_173617.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N9R0.2 GenPept UniProtKB/Swiss-Prot:Q8N9R0

Gene LinkOut

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