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CASC22 cancer susceptibility 22 [ Homo sapiens (human) ]

Gene ID: 283854, updated on 23-Nov-2021

Summary

Official Symbol
CASC22provided by HGNC
Official Full Name
cancer susceptibility 22provided by HGNC
Primary source
HGNC:HGNC:50627
See related
Ensembl:ENSG00000260887
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01373; TCONS_00024290; LincRNA-ENST00000515084
Expression
Restricted expression toward testis (RPKM 1.5) See more
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Genomic context

See CASC22 in Genome Data Viewer
Location:
16q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (52258564..52280299)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (52292476..52314211)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 919 Neighboring gene long intergenic non-protein coding RNA 2180 Neighboring gene uncharacterized LOC105371261 Neighboring gene uncharacterized LOC107983961 Neighboring gene uncharacterized LOC107984901 Neighboring gene VISTA enhancer hs161

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • cancer susceptibility 22 (non-protein coding)
  • cancer susceptibility candidate 22 (non-protein coding)
  • long intergenic non-protein coding RNA 1373

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135281.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007333
    Related
    ENST00000569713.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    52258564..52280299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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