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Nop16 NOP16 nucleolar protein [ Mus musculus (house mouse) ]

Gene ID: 28126, updated on 5-Mar-2024

Summary

Official Symbol
Nop16provided by MGI
Official Full Name
NOP16 nucleolar proteinprovided by MGI
Primary source
MGI:MGI:107862
See related
Ensembl:ENSMUSG00000025869 AllianceGenome:MGI:107862
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D13Wsu177e
Summary
Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in nucleoplasm. Predicted to be active in nucleolus. Is expressed in embryo and extraembryonic component. Orthologous to human NOP16 (NOP16 nucleolar protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver E14 (RPKM 14.3), CNS E11.5 (RPKM 12.5) and 26 other tissues See more
Orthologs
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Genomic context

See Nop16 in Genome Data Viewer
Location:
13 B1; 13 28.83 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (54732004..54737921, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (54584191..54590097, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene SUMO-interacting motifs containing 1 Neighboring gene RIKEN cDNA 4833439L19 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:54666808-54666917 Neighboring gene ADP-ribosylation factor-like 10 Neighboring gene predicted gene, 24195 Neighboring gene STARR-positive B cell enhancer ABC_E927 Neighboring gene HIG1 domain family, member 2A Neighboring gene clathrin light chain B Neighboring gene STARR-seq mESC enhancer starr_34588 Neighboring gene STARR-seq mESC enhancer starr_34589

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nucleolar protein 16
Names
NOP16 nucleolar protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178605.4NP_848720.1  nucleolar protein 16

    See identical proteins and their annotated locations for NP_848720.1

    Status: PROVISIONAL

    Source sequence(s)
    AC155262
    Consensus CDS
    CCDS26531.1
    UniProtKB/Swiss-Prot
    Q8C2P2, Q921K0, Q9CPT5
    UniProtKB/TrEMBL
    D3Z7M5
    Related
    ENSMUSP00000026987.6, ENSMUST00000026987.12
    Conserved Domains (2) summary
    pfam09420
    Location:20153
    Nop16; Ribosome biogenesis protein Nop16
    cl21456
    Location:143177
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    54732004..54737921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247292.2XP_030103152.1  nucleolar protein 16 isoform X1

    Conserved Domains (1) summary
    pfam09420
    Location:2065
    Nop16; Ribosome biogenesis protein Nop16