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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_033989.1 RefSeqGene
- Range
-
5001..203207
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001290046.2 → NP_001276975.1 cat eye syndrome critical region protein 2 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate 5'-terminal exon and uses a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC007666, AF336133, AK308330, AL832377
- Consensus CDS
-
CCDS77646.1
- UniProtKB/Swiss-Prot
-
Q9BXF3
- UniProtKB/TrEMBL
-
B7WPH3
- Related
- ENSP00000383428.2, ENST00000400585.6
- Conserved Domains (2) summary
-
- cd05509
Location:255 → 355
- Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
- pfam15614
Location:81 → 121
- WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
-
NM_001290047.2 → NP_001276976.1 cat eye syndrome critical region protein 2 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC007666, AF336133, AK308330, AL832377, FO681548
- UniProtKB/Swiss-Prot
-
Q9BXF3
- Related
- ENSP00000262608.10, ENST00000262608.12
- Conserved Domains (2) summary
-
- cd05509
Location:418 → 518
- Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
- pfam15614
Location:244 → 284
- WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p13 Primary Assembly
Genomic
-
NC_000022.11 Reference GRCh38.p13 Primary Assembly
- Range
-
17359949..17558151
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017028785.1 → XP_016884274.1 cat eye syndrome critical region protein 2 isoform X1
-
XM_011546132.2 → XP_011544434.1 cat eye syndrome critical region protein 2 isoform X5
- Conserved Domains (2) summary
-
- cd05509
Location:418 → 518
- Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
- pfam15614
Location:244 → 284
- WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
-
XM_011546129.2 → XP_011544431.1 cat eye syndrome critical region protein 2 isoform X3
- Conserved Domains (2) summary
-
- cd05509
Location:418 → 518
- Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
- pfam15614
Location:244 → 284
- WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
-
XM_011546128.2 → XP_011544430.1 cat eye syndrome critical region protein 2 isoform X2
- Conserved Domains (2) summary
-
- cd05509
Location:390 → 490
- Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
- pfam15614
Location:244 → 284
- WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
-
XM_024452234.1 → XP_024308002.1 cat eye syndrome critical region protein 2 isoform X4
- Conserved Domains (2) summary
-
- cd05509
Location:380 → 480
- Bromo_gcn5_like; Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long ...
- cl26464
Location:507 → 990
- Atrophin-1; Atrophin-1 family
-
XM_006724079.3 → XP_006724142.1 cat eye syndrome critical region protein 2 isoform X6
- Conserved Domains (2) summary
-
- PTZ00449
Location:766 → 873
- PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
- PHA03247
Location:43 → 526
- PHA03247; large tegument protein UL36; Provisional
RNA
-
XR_951200.2 RNA Sequence
-
XR_951201.2 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_031413.4: Suppressed sequence
- Description
- NM_031413.4: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.