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Sergef secretion regulating guanine nucleotide exchange factor [ Mus musculus (house mouse) ]

Gene ID: 27414, updated on 5-Mar-2024

Summary

Official Symbol
Sergefprovided by MGI
Official Full Name
secretion regulating guanine nucleotide exchange factorprovided by MGI
Primary source
MGI:MGI:1351630
See related
Ensembl:ENSMUSG00000030839 AllianceGenome:MGI:1351630
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gef; Gnef; Gnefr; DelGEF
Summary
Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in negative regulation of protein secretion. Located in cytoplasm and nucleus. Is expressed in central nervous system; esophagus; and ganglia. Orthologous to human SERGEF (secretion regulating guanine nucleotide exchange factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 6.3), frontal lobe adult (RPKM 5.1) and 28 other tissues See more
Orthologs
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Genomic context

Location:
7 B3; 7 30.2 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (46092583..46289254, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (46443159..46642896, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9691 Neighboring gene myogenic differentiation 1 Neighboring gene STARR-positive B cell enhancer ABC_E4927 Neighboring gene potassium voltage gated channel, Shaw-related subfamily, member 1 Neighboring gene predicted gene, 22969 Neighboring gene STARR-seq mESC enhancer starr_18863 Neighboring gene STARR-seq mESC enhancer starr_18865 Neighboring gene STARR-seq mESC enhancer starr_18866 Neighboring gene STARR-seq mESC enhancer starr_18867 Neighboring gene tryptophan hydroxylase 1 Neighboring gene serum amyloid A-like 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC141208, MGC141209

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity ISA
Inferred from Sequence Alignment
more info
PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of protein secretion ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
secretion-regulating guanine nucleotide exchange factor
Names
deafness locus-associated putative guanine nucleotide exchange factor
guanine nucleotide exchange factor (RCC1 related)
guanine nucleotide exchange factor-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013789.2NP_038817.1  secretion-regulating guanine nucleotide exchange factor

    See identical proteins and their annotated locations for NP_038817.1

    Status: VALIDATED

    Source sequence(s)
    AC090652, AK145819, BY228093
    Consensus CDS
    CCDS21279.1
    UniProtKB/Swiss-Prot
    Q0VDT0, Q3UGM8, Q3UKY0, Q80YD6, Q9QXB7
    Related
    ENSMUSP00000033127.5, ENSMUST00000033127.12
    Conserved Domains (2) summary
    pfam00415
    Location:1764
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam13540
    Location:103132
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    46092583..46289254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153151.1XP_036009044.1  secretion-regulating guanine nucleotide exchange factor isoform X2

    Conserved Domains (2) summary
    COG5184
    Location:17348
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00415
    Location:334380
    RCC1; Regulator of chromosome condensation (RCC1) repeat
  2. XM_030242640.2XP_030098500.1  secretion-regulating guanine nucleotide exchange factor isoform X8

    Conserved Domains (1) summary
    COG5184
    Location:17279
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
  3. XM_006540943.5XP_006541006.1  secretion-regulating guanine nucleotide exchange factor isoform X1

    Conserved Domains (2) summary
    COG5184
    Location:22370
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00415
    Location:356402
    RCC1; Regulator of chromosome condensation (RCC1) repeat
  4. XM_011250869.2XP_011249171.1  secretion-regulating guanine nucleotide exchange factor isoform X5

    See identical proteins and their annotated locations for XP_011249171.1

    Conserved Domains (2) summary
    COG5184
    Location:2255
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00415
    Location:241287
    RCC1; Regulator of chromosome condensation (RCC1) repeat
  5. XM_006540944.4XP_006541007.1  secretion-regulating guanine nucleotide exchange factor isoform X5

    See identical proteins and their annotated locations for XP_006541007.1

    Conserved Domains (2) summary
    COG5184
    Location:2255
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00415
    Location:241287
    RCC1; Regulator of chromosome condensation (RCC1) repeat
  6. XM_030242642.2XP_030098502.1  secretion-regulating guanine nucleotide exchange factor isoform X10

    Conserved Domains (1) summary
    COG5184
    Location:17258
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
  7. XM_036153152.1XP_036009045.1  secretion-regulating guanine nucleotide exchange factor isoform X4

    Conserved Domains (1) summary
    COG5184
    Location:17327
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
  8. XM_030242641.2XP_030098501.1  secretion-regulating guanine nucleotide exchange factor isoform X9

    Conserved Domains (1) summary
    COG5184
    Location:17279
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
  9. XM_030242638.2XP_030098498.1  secretion-regulating guanine nucleotide exchange factor isoform X3

    UniProtKB/TrEMBL
    A0A1L1SUM5
    Related
    ENSMUSP00000150835.2, ENSMUST00000216505.2
    Conserved Domains (1) summary
    COG5184
    Location:17348
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
  10. XM_036153153.1XP_036009046.1  secretion-regulating guanine nucleotide exchange factor isoform X7

    Conserved Domains (1) summary
    COG5184
    Location:17258
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
  11. XM_030242639.2XP_030098499.1  secretion-regulating guanine nucleotide exchange factor isoform X6

    Conserved Domains (1) summary
    COG5184
    Location:17279
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

RNA

  1. XR_003946486.2 RNA Sequence