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ZNF330 zinc finger protein 330 [ Homo sapiens (human) ]

Gene ID: 27309, updated on 17-Jun-2019

Summary

Official Symbol
ZNF330provided by HGNC
Official Full Name
zinc finger protein 330provided by HGNC
Primary source
HGNC:HGNC:15462
See related
Ensembl:ENSG00000109445 MIM:609550
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NOA36; HSA6591
Expression
Ubiquitous expression in heart (RPKM 28.5), thyroid (RPKM 16.5) and 25 other tissues See more
Orthologs

Genomic context

See ZNF330 in Genome Data Viewer
Location:
4q31.21
Exon count:
11
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (141220294..141234697)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (142142049..142155851)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 9 Neighboring gene RNY1 pseudogene 14 Neighboring gene ring finger protein 150 Neighboring gene long intergenic non-protein coding RNA 2432 Neighboring gene long intergenic non-protein coding RNA 2276

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding NAS
Non-traceable Author Statement
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
chromosome, centromeric region IDA
Inferred from Direct Assay
more info
PubMed 
midbody IDA
Inferred from Direct Assay
more info
PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 330
Names
nucleolar autoantigen 36
nucleolar cysteine-rich protein
zinc finger autoantigen 330

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001292002.2NP_001278931.1  zinc finger protein 330 isoform 2

    See identical proteins and their annotated locations for NP_001278931.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, initiates translation at an alternate start codon and lacks an alternate exon in the 5' coding region, compared to variant 1. It encodes isoform 2, which is shorter and has a distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AJ006591, AK002106, AK223609, AK294089, BC004421, BU532661
    UniProtKB/Swiss-Prot
    Q9Y3S2
    UniProtKB/TrEMBL
    B4DFG9, Q53EN0
    Conserved Domains (1) summary
    pfam06524
    Location:11208
    NOA36; NOA36 protein
  2. NM_014487.6NP_055302.1  zinc finger protein 330 isoform 1

    See identical proteins and their annotated locations for NP_055302.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AJ006591, AK002106, AK223609, BC004421, BU532661
    Consensus CDS
    CCDS3754.1
    UniProtKB/Swiss-Prot
    Q9Y3S2
    UniProtKB/TrEMBL
    Q53EN0
    Related
    ENSP00000262990.4, ENST00000262990.9
    Conserved Domains (1) summary
    pfam06524
    Location:1264
    NOA36; NOA36 protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    141220294..141234697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017008033.1XP_016863522.1  zinc finger protein 330 isoform X1

    UniProtKB/Swiss-Prot
    Q9Y3S2
    Conserved Domains (1) summary
    pfam06524
    Location:1264
    NOA36; NOA36 protein
  2. XM_024453986.1XP_024309754.1  zinc finger protein 330 isoform X1

    Conserved Domains (1) summary
    pfam06524
    Location:1264
    NOA36; NOA36 protein
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