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SPINK4 serine peptidase inhibitor Kazal type 4 [ Homo sapiens (human) ]

Gene ID: 27290, updated on 18-Aug-2020

Summary

Official Symbol
SPINK4provided by HGNC
Official Full Name
serine peptidase inhibitor Kazal type 4provided by HGNC
Primary source
HGNC:HGNC:16646
See related
Ensembl:ENSG00000122711 MIM:613929
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PEC60; HEL136; PEC-60
Expression
Biased expression in colon (RPKM 295.5), small intestine (RPKM 212.3) and 2 other tissues See more
Orthologs

Genomic context

See SPINK4 in Genome Data Viewer
Location:
9p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (33240167..33248567)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (33240196..33248565)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 1 Neighboring gene microRNA 12117 Neighboring gene B4GALT1 antisense RNA 1 Neighboring gene RNA, U4atac small nuclear 15, pseudogene Neighboring gene BAG cochaperone 1 Neighboring gene charged multivesicular body protein 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC133107

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
response to drug IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
serine protease inhibitor Kazal-type 4
Names
epididymis luminal protein 136
gastrointestinal peptide
peptide PEC-60 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014471.3NP_055286.1  serine protease inhibitor Kazal-type 4 precursor

    See identical proteins and their annotated locations for NP_055286.1

    Status: VALIDATED

    Source sequence(s)
    AA296922, AF048700
    Consensus CDS
    CCDS6536.1
    UniProtKB/Swiss-Prot
    O60575
    UniProtKB/TrEMBL
    V9HWG8
    Related
    ENSP00000369045.3, ENST00000379721.4
    Conserved Domains (1) summary
    cl00097
    Location:4286
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    33240167..33248567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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