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Rpl7a ribosomal protein L7A [ Mus musculus (house mouse) ]

Gene ID: 27176, updated on 8-Jan-2023

Summary

Official Symbol
Rpl7aprovided by MGI
Official Full Name
ribosomal protein L7Aprovided by MGI
Primary source
MGI:MGI:1353472
See related
Ensembl:ENSMUSG00000062647 AllianceGenome:MGI:1353472
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Surf3
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA. Located in membrane and polysomal ribosome. Is active in synapse. Is expressed in embryo. Orthologous to human RPL7A (ribosomal protein L7a). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in liver E14 (RPKM 336.0), CNS E11.5 (RPKM 322.6) and 28 other tissues See more
Orthologs
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Genomic context

See Rpl7a in Genome Data Viewer
Location:
2 A3; 2 19.1 cM
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (26800697..26803324)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (26910685..26913312)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene surfeit gene 6 Neighboring gene mediator complex subunit 22 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene predicted gene, 23969 Neighboring gene predicted gene, 22879 Neighboring gene predicted gene, 24134 Neighboring gene surfeit gene 1 Neighboring gene surfeit gene 2 Neighboring gene surfeit gene 4 Neighboring gene predicted gene, 36591

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC103146

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in translation at postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
involved_in translation at presynapse NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm NAS
Non-traceable Author Statement
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
part_of cytosolic large ribosomal subunit IPI
Inferred from Physical Interaction
more info
PubMed 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in polysomal ribosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
part_of polysome ISO
Inferred from Sequence Orthology
more info
 
is_active_in postsynapse NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in presynapse NAS
Non-traceable Author Statement
more info
PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in ribosome NAS
Non-traceable Author Statement
more info
PubMed 
is_active_in synapse EXP
Inferred from Experiment
more info
PubMed 
is_active_in synapse IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
60S ribosomal protein L7a
Names
surfeit 3
surfeit locus protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013721.3NP_038749.1  60S ribosomal protein L7a

    See identical proteins and their annotated locations for NP_038749.1

    Status: PROVISIONAL

    Source sequence(s)
    AK019449
    Consensus CDS
    CCDS15815.1
    UniProtKB/Swiss-Prot
    P12970, Q91YM3
    UniProtKB/TrEMBL
    A0A8C6HIP9, Q58ET1
    Related
    ENSMUSP00000099962.5, ENSMUST00000102898.5
    Conserved Domains (1) summary
    PTZ00365
    Location:16266
    PTZ00365; 60S ribosomal protein L7Ae-like; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    26800697..26803324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318923.2XP_017174412.1  60S ribosomal protein L7a isoform X1

    Related
    ENSMUST00000137376.8
    Conserved Domains (1) summary
    PTZ00365
    Location:16207
    PTZ00365; 60S ribosomal protein L7Ae-like; Provisional