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Mir124a-1hg Mir124-1 host gene (non-protein coding) [ Mus musculus (house mouse) ]

Gene ID: 268755, updated on 8-Feb-2024

Summary

Official Symbol
Mir124a-1hgprovided by MGI
Official Full Name
Mir124-1 host gene (non-protein coding)provided by MGI
Primary source
MGI:MGI:2442197
See related
Ensembl:ENSMUSG00000097545 AllianceGenome:MGI:2442197
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rncr3; mir-3078; mir-124-1; A930011O12Rik
Summary
Acts upstream of or within several processes, including gene silencing by miRNA; long-term synaptic potentiation; and sensory perception of sound. Is expressed in brain subventricular zone; brain ventricular layer; and spinal cord. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 109.3), CNS E14 (RPKM 72.2) and 5 other tissues See more
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Genomic context

Location:
14 D1; 14 33.77 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (64825564..64831410)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (64588115..64593961)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene methionine sulfoxide reductase A Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:64942459-64942678 Neighboring gene predicted gene, 52131 Neighboring gene STARR-seq mESC enhancer starr_36939 Neighboring gene STARR-seq mESC enhancer starr_36940 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:65053006-65053159 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:65059749-65059936 Neighboring gene predicted gene, 52130 Neighboring gene STARR-seq mESC enhancer starr_36941 Neighboring gene STARR-seq mESC enhancer starr_36942 Neighboring gene STARR-seq mESC enhancer starr_36944 Neighboring gene STARR-seq mESC enhancer starr_36945 Neighboring gene microRNA 124a-1 Neighboring gene STARR-seq mESC enhancer starr_36948 Neighboring gene microRNA 3078 Neighboring gene STARR-seq mESC enhancer starr_36949 Neighboring gene STARR-seq mESC enhancer starr_36950 Neighboring gene predicted gene, 36924 Neighboring gene kinesin family member 13B Neighboring gene non-SMC element 2 homolog (MMS21, S. cerevisiae) pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040709.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC134898, AK032410, AK044422, BE949618
    Related
    ENSMUST00000180610.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    64825564..64831410
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)