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RTL8A retrotransposon Gag like 8A [ Homo sapiens (human) ]

Gene ID: 26071, updated on 10-Oct-2019

Summary

Official Symbol
RTL8Aprovided by HGNC
Official Full Name
retrotransposon Gag like 8Aprovided by HGNC
Primary source
HGNC:HGNC:24514
See related
Ensembl:ENSG00000203950
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXX1b; MAR8A; SIRH6; FAM127B
Expression
Ubiquitous expression in ovary (RPKM 21.7), fat (RPKM 19.6) and 25 other tissues See more
Orthologs

Genomic context

See RTL8A in Genome Data Viewer
Location:
Xq26.3
Exon count:
1
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (135050932..135052191, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134184962..134186221, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268301 Neighboring gene retrotransposon Gag like 8C Neighboring gene nucleolin pseudogene 2 Neighboring gene small integral membrane protein 10 like 2B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC8471, DKFZp564B147

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
retrotransposon Gag-like protein 8A
Names
Sushi-Ichi retrotransposon homolog 6
family with sequence similarity 127 member B
mammalian retrotransposon derived protein 8A
mammalian retrotransposon-derived 8A
protein FAM127B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078172.1NP_001071640.1  retrotransposon Gag-like protein 8A isoform 1

    See identical proteins and their annotated locations for NP_001071640.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is intronless and encodes the longer isoform (1).
    Source sequence(s)
    BC000393, BM050811, BU161376
    Consensus CDS
    CCDS43998.1
    UniProtKB/Swiss-Prot
    Q9BWD3
    Related
    ENSP00000375267.1, ENST00000370775.2
    Conserved Domains (1) summary
    pfam16297
    Location:2113
    DUF4939; Domain of unknown function (DUF4939)
  2. NM_001134321.2NP_001127793.1  retrotransposon Gag-like protein 8A isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment, as compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, as compared to isoform 1.
    Source sequence(s)
    BC000393, CN367136
    UniProtKB/Swiss-Prot
    Q9BWD3
    Conserved Domains (1) summary
    pfam16297
    Location:264
    DUF4939; Domain of unknown function (DUF4939)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    135050932..135052191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_015582.2: Suppressed sequence

    Description
    NM_015582.2: This RefSeq was permanently suppressed because it contains the wrong CDS.
  2. NR_002732.1: Suppressed sequence

    Description
    NR_002732.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
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