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PP7080 uncharacterized LOC25845 [ Homo sapiens (human) ]

Gene ID: 25845, updated on 23-Nov-2021

Summary

Gene symbol
PP7080
Gene description
uncharacterized LOC25845
See related
Ensembl:ENSG00000188242
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in colon (RPKM 98.5), kidney (RPKM 72.2) and 19 other tissues See more
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Genomic context

See PP7080 in Genome Data Viewer
Location:
5p15.33
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (470510..472965, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (470625..473080, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene EXOC3 antisense RNA 1 Neighboring gene exocyst complex component 3 Neighboring gene SLC9A3 antisense RNA 1 Neighboring gene solute carrier family 9 member A3 Neighboring gene uncharacterized LOC107986395

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • CTD-2228K2.5

Clone Names

  • DKFZp564I1171

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024158.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF370427, BC086861
    Related
    ENST00000342584.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    470510..472965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_015389.1: Suppressed sequence

    Description
    NM_015389.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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