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YIPF3 Yip1 domain family member 3 [ Homo sapiens (human) ]

Gene ID: 25844, updated on 28-Sep-2022

Summary

Official Symbol
YIPF3provided by HGNC
Official Full Name
Yip1 domain family member 3provided by HGNC
Primary source
HGNC:HGNC:21023
See related
Ensembl:ENSG00000137207 MIM:609775; AllianceGenome:HGNC:21023
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KLIP1; FinGER3; C6orf109; dJ337H4.3
Summary
Predicted to be involved in cell differentiation. Located in Golgi apparatus and transport vesicle. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta (RPKM 36.5), prostate (RPKM 33.2) and 25 other tissues See more
Orthologs
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Genomic context

See YIPF3 in Genome Data Viewer
Location:
6p21.1
Exon count:
9
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (43511832..43516926, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (43340571..43345665, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (43479570..43484664, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene tight junction associated protein 1 Neighboring gene leucine rich repeat containing 73 Neighboring gene RNA polymerase I and III subunit C Neighboring gene ribosomal protein S2 pseudogene 29 Neighboring gene exportin 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp566C243

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in transport vesicle IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
protein YIPF3
Names
killer lineage protein 1
natural killer cell-specific antigen KLIP1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015388.4NP_056203.2  protein YIPF3

    See identical proteins and their annotated locations for NP_056203.2

    Status: VALIDATED

    Source sequence(s)
    BC019297
    Consensus CDS
    CCDS4899.1
    UniProtKB/Swiss-Prot
    Q9GZM5, Q9Y3U9
    Related
    ENSP00000361499.2, ENST00000372422.7

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    43511832..43516926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047418608.1XP_047274564.1  protein YIPF3 isoform X1

    UniProtKB/TrEMBL
    Q5JTD5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    43340571..43345665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)