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YIPF3 Yip1 domain family member 3 [ Homo sapiens (human) ]

Gene ID: 25844, updated on 10-Oct-2019

Summary

Official Symbol
YIPF3provided by HGNC
Official Full Name
Yip1 domain family member 3provided by HGNC
Primary source
HGNC:HGNC:21023
See related
Ensembl:ENSG00000137207 MIM:609775
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KLIP1; FinGER3; C6orf109; dJ337H4.3
Expression
Ubiquitous expression in placenta (RPKM 36.5), prostate (RPKM 33.2) and 25 other tissues See more
Orthologs

Genomic context

See YIPF3 in Genome Data Viewer
Location:
6p21.1
Exon count:
9
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (43511832..43516926, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (43479565..43484728, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene tight junction associated protein 1 Neighboring gene leucine rich repeat containing 73 Neighboring gene RNA polymerase I and III subunit C Neighboring gene exportin 5 Neighboring gene ribosomal protein S2 pseudogene 29 Neighboring gene DNA polymerase eta Neighboring gene GTP binding protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp566C243

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IDA
Inferred from Direct Assay
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
transport vesicle IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
protein YIPF3
Names
killer lineage protein 1
natural killer cell-specific antigen KLIP1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015388.4NP_056203.2  protein YIPF3

    See identical proteins and their annotated locations for NP_056203.2

    Status: VALIDATED

    Source sequence(s)
    BC019297
    Consensus CDS
    CCDS4899.1
    UniProtKB/Swiss-Prot
    Q9GZM5
    Related
    ENSP00000361499.2, ENST00000372422.7
    Conserved Domains (1) summary
    pfam04893
    Location:153258
    Yip1; Yip1 domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    43511832..43516926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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