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SNORD82 small nucleolar RNA, C/D box 82 [ Homo sapiens (human) ]

Gene ID: 25826, updated on 10-Oct-2023

Summary

Official Symbol
SNORD82provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 82provided by HGNC
Primary source
HGNC:HGNC:10240
See related
Ensembl:ENSG00000202400 MIM:611133; AllianceGenome:HGNC:10240
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U82; Z25; RNU82
Summary
The majority of small nucleolar RNAs (snoRNAs) function as guide RNAs in the nucleotide modification of preribosomal RNA (pre-rRNA). C/D box snoRNAs, like SNORD82, are involved in site-specific 2-prime-O-ribose methylation of pre-rRNA (Rebane and Metspalu, 1999 [PubMed 10524220]).[supplied by OMIM, Mar 2008]
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Genomic context

See SNORD82 in Genome Data Viewer
Location:
2q37.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (231460368..231460442, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (231944807..231944881, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (232325079..232325153, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, H/ACA box 75 Neighboring gene nucleolin Neighboring gene small nucleolar RNA, C/D box 20 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:232328263-232328934 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:232328935-232329604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17287 Neighboring gene NANOG hESC enhancer GRCh37_chr2:232340658-232341163 Neighboring gene uncharacterized LOC107985998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:232345298-232345810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:232345811-232346321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17288 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17289 Neighboring gene RNA, U2 small nuclear 22, pseudogene

Genomic regions, transcripts, and products

General gene information

Markers

Other Names

  • RNA, U82 small nucleolar

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004398.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ010666
    Related
    ENST00000365530.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    231460368..231460442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    231944807..231944881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)