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LOC25500881 uncharacterized LOC25500881 [ Medicago truncatula (barrel medic) ]

Gene ID: 25500881, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25500881
Gene description
uncharacterized LOC25500881
Locus tag
MtrunA17_Chr8g0348961
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (11546392..11551716, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (11496712..11502118, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene elicitor-responsive protein 3 Neighboring gene gibberellin 20-oxidase-like protein Neighboring gene acyl-CoA thioesterase 2 Neighboring gene exopolygalacturonase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC25500881
Names
calmodulin-binding heat-shock protein
putative lipoprotein lipase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    11546392..11551716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024773178.2 → XP_024628946.1  uncharacterized protein LOC25500881

    UniProtKB/TrEMBL
    A0A072TNX6
    Conserved Domains (2) summary
    pfam01764
    Location:109 → 246
    Lipase_3; Lipase (class 3)
    pfam03893
    Location:10 → 74
    Lipase3_N; Lipase 3 N-terminal region

  2. XM_013589382.3 → XP_013444836.1  uncharacterized protein LOC25500881

    UniProtKB/TrEMBL
    A0A072TNX6
    Conserved Domains (2) summary
    pfam01764
    Location:109 → 246
    Lipase_3; Lipase (class 3)
    pfam03893
    Location:10 → 74
    Lipase3_N; Lipase 3 N-terminal region
Nucleotide Protein
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