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LOC25498520 auxin response factor 9 [ Medicago truncatula (barrel medic) ]

Gene ID: 25498520, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25498520
Gene description
auxin response factor 9
Locus tag
MtrunA17_Chr7g0239061
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (29223215..29228310)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (22756451..22761490)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC25498517 Neighboring gene uncharacterized LOC25498519 Neighboring gene protein SRG1-like Neighboring gene probable 2-oxoglutarate/Fe(II)-dependent dioxygenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 9
Names
auxin response factor 2
putative transcription factor ARF family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    29223215..29228310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013593447.3 → XP_013448901.1  auxin response factor 9

    UniProtKB/TrEMBL
    A0A072U1C1
    Conserved Domains (3) summary
    pfam02309
    Location:558 → 648
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:116 → 215
    B3; B3 DNA binding domain
    pfam06507
    Location:242 → 323
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

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