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CALHM5 calcium homeostasis modulator family member 5 [ Homo sapiens (human) ]

Gene ID: 254228, updated on 1-Jun-2020

Summary

Official Symbol
CALHM5provided by HGNC
Official Full Name
calcium homeostasis modulator family member 5provided by HGNC
Primary source
HGNC:HGNC:21568
See related
Ensembl:ENSG00000178033
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM26E; C6orf188; dJ493F7.3
Expression
Broad expression in placenta (RPKM 2.8), fat (RPKM 2.2) and 21 other tissues See more
Orthologs

Genomic context

See CALHM5 in Genome Data Viewer
Location:
6q22.1
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (116511639..116524788)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (116832808..116839709)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene keratin 18 pseudogene 22 Neighboring gene calcium homeostasis modulator family member 6 Neighboring gene trafficking protein particle complex 3 like Neighboring gene calcium homeostasis modulator family member 4 Neighboring gene RWD domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC45451

Gene Ontology Provided by GOA

Function Evidence Code Pubs
cation channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
calcium homeostasis modulator protein 5
Names
family with sequence similarity 26 member E
protein FAM26E

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153711.5NP_714922.1  calcium homeostasis modulator protein 5

    See identical proteins and their annotated locations for NP_714922.1

    Status: VALIDATED

    Source sequence(s)
    AA468683, AL121953, BC032556, HY035391
    Consensus CDS
    CCDS5108.1
    UniProtKB/Swiss-Prot
    Q8N5C1
    Related
    ENSP00000357588.3, ENST00000368599.4
    Conserved Domains (1) summary
    pfam14798
    Location:1251
    Ca_hom_mod; Calcium homeostasis modulator

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    116511639..116524788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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