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rad13 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541051, updated on 11-Sep-2024

Summary

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Official Symbol
rad13
Primary source
PomBase:SPBC3E7.08c
Locus tag
SPOM_SPBC3E7.08C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2672990..2676569, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene vacuolar amino acid transmembrane transporter Fnx2 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Sad1-UNC-like protein Neighboring gene ncRNA Neighboring gene DNAJ domain-containing protein type Caj1/Djp1 Neighboring gene methionine aminopeptidase Fma1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cross-talk between nucleotide excision and homologous recombination DNA repair pathways in the mechanism of action of antitumor trabectedin. Herrero AB, et al. Cancer Res, 2006 Aug 15. PMID 16912194
  2. Contribution of base excision repair, nucleotide excision repair, and DNA recombination to alkylation resistance of the fission yeast Schizosaccharomyces pombe. Memisoglu A, et al. J Bacteriol, 2000 Apr. PMID 10735851, Free PMC Article
  3. Removal of cyclobutane pyrimidine dimers by the UV damage repair and nucleotide excision repair pathways of Schizosaccharomyces pombe at nucleotide resolution. Lombaerts M, et al. Nucleic Acids Res, 1999 Jul 15. PMID 10390527, Free PMC Article
  4. Identification and characterization of the rhp23(+) DNA repair gene in Schizosaccharomyces pombe. Lombaerts M, et al. Biochem Biophys Res Commun, 2000 Feb 5. PMID 10652237
  5. The rad18 gene of Schizosaccharomyces pombe defines a new subgroup of the SMC superfamily involved in DNA repair. Lehmann AR, et al. Mol Cell Biol, 1995 Dec. PMID 8524274, Free PMC Article

See all (49) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables single-stranded DNA endodeoxyribonuclease activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in nucleotide-excision repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DNA repair nuclease Rad13

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2672990..2676569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022011.3 → NP_596095.1  DNA repair nuclease Rad13 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596095.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O59728, P28706
    Conserved Domains (3) summary
    cd09904
    Location:837 → 932
    H3TH_XPG; H3TH domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease
    cd09868
    Location:1 → 130
    PIN_XPG; PIN domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs
    TIGR00600
    Location:1 → 1021
    rad2; DNA excision repair protein (rad2)
Nucleotide Protein
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