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sre2 membrane-tethered transcription factor [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541044, updated on 18-Sep-2024

Summary

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Official Symbol
sre2
Official Full Name
membrane-tethered transcription factor
Primary source
PomBase:SPBC354.05c
Locus tag
SPOM_SPBC354.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (551130..555295, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Set1C complex WD repeat protein Swd3 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mitochondrial ribosomal protein subunit S16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Computational prediction of membrane-tethered transcription factors. Zupicich J, et al. Genome Biol, 2001. PMID 11790253, Free PMC Article
  2. ras1 and pat1 alleles interact to quantitatively and qualitatively alter conjugation in fission yeast. Mach KE, et al. Curr Genet, 1998 Sep. PMID 9745019
  3. A Golgi rhomboid protease Rbd2 recruits Cdc48 to cleave yeast SREBP. Hwang J, et al. EMBO J, 2016 Nov 2. PMID 27655872, Free PMC Article
  4. Subunit architecture of the Golgi Dsc E3 ligase required for sterol regulatory element-binding protein (SREBP) cleavage in fission yeast. Lloyd SJ, et al. J Biol Chem, 2013 Jul 19. PMID 23760507, Free PMC Article
  5. Deciphering the transcriptional-regulatory network of flocculation in Schizosaccharomyces pombe. Kwon EJ, et al. PLoS Genet, 2012. PMID 23236291, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA-binding transcription activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific ISM
Inferred from Sequence Model
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytoplasm HDA PubMed 
is_active_in membrane ISM
Inferred from Sequence Model
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
membrane-tethered transcription factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    551130..555295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021135.3 → NP_595229.1  membrane-tethered transcription factor [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595229.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O43019
    Conserved Domains (1) summary
    pfam00010
    Location:427 → 496
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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