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SFTA3 surfactant associated 3 [ Homo sapiens (human) ]

Gene ID: 253970, updated on 8-Jul-2021

Summary

Official Symbol
SFTA3provided by HGNC
Official Full Name
surfactant associated 3provided by HGNC
Primary source
HGNC:HGNC:18387
See related
Ensembl:ENSG00000229415 Ensembl:ENSG00000257520 MIM:617860
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPH; SP-H; NANCI; SFTPH
Expression
Restricted expression toward lung (RPKM 71.4) See more
Orthologs
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Genomic context

See SFTA3 in Genome Data Viewer
Location:
14q13.3
Exon count:
7
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (36473288..36519556, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (36942493..36988761, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1538 Neighboring gene VISTA enhancer hs704 Neighboring gene VISTA enhancer hs1166 Neighboring gene NKX2-1 antisense RNA 1 Neighboring gene uncharacterized LOC105370453 Neighboring gene NK2 homeobox 1 Neighboring gene phosphorylase kinase regulatory subunit beta pseudogene 2 Neighboring gene ribosomal protein L29 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Other Names

  • NKX2.1 associated non-coding intergenic RNA
  • Nkx2.1-associated noncoding intergenic RNA
  • putative protein SFTA3
  • surfactant-associated protein 3
  • surfactant-associated protein H

Clone Names

  • FLJ23494

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in wound healing IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in clathrin-coated endocytic vesicle TAS
Traceable Author Statement
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum membrane TAS
Traceable Author Statement
more info
 
located_in extracellular region TAS
Traceable Author Statement
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in lamellar body TAS
Traceable Author Statement
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_138597.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
  2. NR_138598.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
  3. NR_138599.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
    Related
    ENST00000677732.1
  4. NR_138600.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
  5. NR_138601.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
  6. NR_161362.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
    Related
    ENST00000518529.6
  7. NR_161363.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
  8. NR_161364.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
  9. NR_161365.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL132857
    Related
    ENST00000521945.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    36473288..36519556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001101341.1: Suppressed sequence

    Description
    NM_001101341.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001331217.1: Suppressed sequence

    Description
    NM_001331217.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001352986.1: Suppressed sequence

    Description
    NM_001352986.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  4. NM_001352987.1: Suppressed sequence

    Description
    NM_001352987.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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