Format

Send to:

Choose Destination

GPATCH11 G-patch domain containing 11 [ Homo sapiens (human) ]

Gene ID: 253635, updated on 7-Jun-2020

Summary

Official Symbol
GPATCH11provided by HGNC
Official Full Name
G-patch domain containing 11provided by HGNC
Primary source
HGNC:HGNC:26768
See related
Ensembl:ENSG00000152133
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CENPY; CCDC75; CENP-Y
Expression
Ubiquitous expression in fat (RPKM 17.4), testis (RPKM 7.9) and 23 other tissues See more
Orthologs

Genomic context

See GPATCH11 in Genome Data Viewer
Location:
2p22.2
Exon count:
11
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (37084518..37099244)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (37311594..37326387)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene striatin Neighboring gene RNA, U6 small nuclear 577, pseudogene Neighboring gene HEAT repeat containing 5B Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 2 Neighboring gene ARL14EP pseudogene 1 Neighboring gene sulfotransferase family 6B member 1 Neighboring gene ribosomal protein L31 pseudogene 16

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ38348

Gene Ontology Provided by GOA

Function Evidence Code Pubs
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
condensed chromosome kinetochore IEA
Inferred from Electronic Annotation
more info
 
kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
kinetochore IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
G patch domain-containing protein 11
Names
centromere protein Y
coiled-coil domain containing 75
coiled-coil domain-containing protein 75
g patch domain-containing protein 11

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001278505.2NP_001265434.1  G patch domain-containing protein 11 isoform 2

    See identical proteins and their annotated locations for NP_001265434.1

    Status: VALIDATED

    Source sequence(s)
    AC007899
    Consensus CDS
    CCDS62891.1
    UniProtKB/Swiss-Prot
    Q8N954
    Related
    ENSP00000281932.5, ENST00000281932.5
    Conserved Domains (1) summary
    pfam13821
    Location:108155
    DUF4187; Domain of unknown function (DUF4187)
  2. NM_001322249.4NP_001309178.3  G patch domain-containing protein 11 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC007899
  3. NM_001371856.3NP_001358785.2  G patch domain-containing protein 11 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC007899
  4. NM_001371858.3NP_001358787.2  G patch domain-containing protein 11 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC007899
  5. NM_001371859.3NP_001358788.2  G patch domain-containing protein 11 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC007899
  6. NM_001371860.3NP_001358789.2  G patch domain-containing protein 11 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC007899
  7. NM_001371861.3NP_001358790.2  G patch domain-containing protein 11 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC007899
  8. NM_001371862.3NP_001358791.2  G patch domain-containing protein 11 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC007899
  9. NM_174931.4NP_777591.4  G patch domain-containing protein 11 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC007899, AK095667, AK294697
    Consensus CDS
    CCDS1785.3
    Related
    ENSP00000501347.1, ENST00000674370.1

RNA

  1. NR_163986.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007899
  2. NR_163987.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007899

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    37084518..37099244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center