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Fbxo46 F-box protein 46 [ Mus musculus (house mouse) ]

Gene ID: 243867, updated on 2-Nov-2024

Summary

Official Symbol
Fbxo46provided by MGI
Official Full Name
F-box protein 46provided by MGI
Primary source
MGI:MGI:2444918
See related
Ensembl:ENSMUSG00000050428 AllianceGenome:MGI:2444918
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fbxo34l; 20D7-FC4; 4932704E22Rik
Summary
Orthologous to human FBXO46 (F-box protein 46). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis adult (RPKM 15.8), thymus adult (RPKM 7.4) and 28 other tissues See more
Orthologs
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Genomic context

See Fbxo46 in Genome Data Viewer
Location:
7 A3; 7 9.46 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (18853784..18872186)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (19119859..19138261)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene dystrophia myotonica-protein kinase Neighboring gene microRNA 3100 Neighboring gene STARR-positive B cell enhancer ABC_E9285 Neighboring gene sine oculis-related homeobox 5 Neighboring gene meiosis initiator Neighboring gene STARR-positive B cell enhancer ABC_E287 Neighboring gene STARR-positive B cell enhancer ABC_E10426 Neighboring gene glutaminyl-peptide cyclotransferase-like Neighboring gene STARR-positive B cell enhancer ABC_E1081 Neighboring gene small nuclear ribonucleoprotein D2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175530.3NP_780739.1  F-box only protein 46

    See identical proteins and their annotated locations for NP_780739.1

    Status: VALIDATED

    Source sequence(s)
    AC145199
    Consensus CDS
    CCDS20890.1
    UniProtKB/Swiss-Prot
    Q8BG80
    Related
    ENSMUSP00000055692.4, ENSMUST00000053109.5
    Conserved Domains (1) summary
    pfam12937
    Location:473507
    F-box-like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    18853784..18872186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006539936.4XP_006539999.1  F-box only protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006539999.1

    UniProtKB/Swiss-Prot
    Q8BG80
    Conserved Domains (1) summary
    pfam12937
    Location:473507
    F-box-like
  2. XM_006539935.4XP_006539998.1  F-box only protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006539998.1

    UniProtKB/Swiss-Prot
    Q8BG80
    Related
    ENSMUSP00000129427.2, ENSMUST00000165913.2
    Conserved Domains (1) summary
    pfam12937
    Location:473507
    F-box-like
  3. XM_006539937.4XP_006540000.1  F-box only protein 46 isoform X1

    See identical proteins and their annotated locations for XP_006540000.1

    UniProtKB/Swiss-Prot
    Q8BG80
    Conserved Domains (1) summary
    pfam12937
    Location:473507
    F-box-like