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Tmem130 transmembrane protein 130 [ Mus musculus (house mouse) ]

Gene ID: 243339, updated on 11-Apr-2024

Summary

Official Symbol
Tmem130provided by MGI
Official Full Name
transmembrane protein 130provided by MGI
Primary source
MGI:MGI:3607706
See related
Ensembl:ENSMUSG00000043388 AllianceGenome:MGI:3607706
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C130036G08
Summary
Predicted to be located in Golgi apparatus. Predicted to be integral component of plasma membrane. Is expressed in central nervous system; dorsal root ganglion; and sensory organ. Orthologous to human TMEM130 (transmembrane protein 130). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 92.1), whole brain E14.5 (RPKM 73.1) and 8 other tissues See more
Orthologs
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Genomic context

See Tmem130 in Genome Data Viewer
Location:
5 G2; 5 84.76 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (144672725..144698388, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (144735915..144761578, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 54313 Neighboring gene STARR-seq mESC enhancer starr_14816 Neighboring gene STARR-seq mESC enhancer starr_14818 Neighboring gene predicted pseudogene 6272 Neighboring gene STARR-seq mESC enhancer starr_14819 Neighboring gene predicted gene, 38739 Neighboring gene transformation/transcription domain-associated protein Neighboring gene predicted gene, 23995

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Clone Names

  • MGC157450, MGC157451

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177735.4NP_808403.2  transmembrane protein 130 precursor

    See identical proteins and their annotated locations for NP_808403.2

    Status: PROVISIONAL

    Source sequence(s)
    AC131728
    Consensus CDS
    CCDS19851.1
    UniProtKB/Swiss-Prot
    Q6NXM3, Q8C4P6
    Related
    ENSMUSP00000061100.8, ENSMUST00000061446.8
    Conserved Domains (1) summary
    pfam00801
    Location:174207
    PKD; PKD domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    144672725..144698388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)