U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

F751_1217 DNA ligase 1 [ Auxenochlorella protothecoides ]

Gene ID: 23612608, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
F751_1217
Gene description
DNA ligase 1
Locus tag
F751_1217
Gene type
protein coding
RNA name
DNA ligase 1
RefSeq status
PROVISIONAL
Organism
Auxenochlorella protothecoides (strain: 0710)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Unknown
Exon count:
14

NW_011934327.1Genomic Context describing neighboring genes Neighboring gene Peptidyl-prolyl cis-trans isomerase cyp5 Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene Epidermal growth factor receptor substrate 15-like protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_011934327.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes. Gao C, et al. BMC Genomics, 2014 Jul 10. PMID 25012212, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
DNA ligase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_011934327.1 Reference assembly

    Range
    179793..187275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011402105.1 → XP_011400407.1  DNA ligase 1 [Auxenochlorella protothecoides]

    See identical proteins and their annotated locations for XP_011400407.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A087SNY6, A0A1D1ZRR7
    Conserved Domains (6) summary
    cd07969
    Location:1077 → 1200
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    PLN03113
    Location:477 → 1201
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:590 → 769
    DNA_ligase_A_N; DNA ligase N terminus
    pfam07522
    Location:174 → 279
    DRMBL; DNA repair metallo-beta-lactamase
    cl12015
    Location:827 → 1071
    Adenylation_DNA_ligase_like; Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases
    cl23716
    Location:4 → 66
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases