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F751_0471 4-alpha-glucanotransferase DPE2 [ Auxenochlorella protothecoides ]

Gene ID: 23611862, updated on 9-Nov-2023

Summary

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Gene symbol
F751_0471
Gene description
4-alpha-glucanotransferase DPE2
Locus tag
F751_0471
Gene type
protein coding
RNA name
4-alpha-glucanotransferase DPE2
RefSeq status
PROVISIONAL
Organism
Auxenochlorella protothecoides (strain: 0710)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
20

NW_011934120.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Meiotically up-regulated protein 158 protein Neighboring gene Metaxin-1 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011934120.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes. Gao C, et al. BMC Genomics, 2014 Jul 10. PMID 25012212, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-alpha-glucanotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
4-alpha-glucanotransferase DPE2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_011934120.1 Reference assembly

    Range
    119287..125858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011397229.1 → XP_011395531.1  4-alpha-glucanotransferase DPE2 [Auxenochlorella protothecoides]

    See identical proteins and their annotated locations for XP_011395531.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A087SAC1, A0A1D2A081
    Conserved Domains (3) summary
    PLN02950
    Location:2 → 899
    PLN02950; 4-alpha-glucanotransferase
    pfam02446
    Location:233 → 890
    Glyco_hydro_77; 4-alpha-glucanotransferase
    cl15347
    Location:121 → 216
    CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...
Nucleotide Protein
Heading Accession and Version

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