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LINC01565 long intergenic non-protein coding RNA 1565 [ Homo sapiens (human) ]

Gene ID: 23434, updated on 10-Dec-2024

Summary

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Official Symbol
LINC01565provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1565provided by HGNC
Primary source
HGNC:HGNC:17099
See related
Ensembl:ENSG00000198685 MIM:618259; AllianceGenome:HGNC:17099
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GR6; C3orf27
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01565 in Genome Data Viewer
Location:
3q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (128572000..128576086, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131313560..131317646, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128290843..128294929, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC90246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128243441-128243940 Neighboring gene CRISPRi-FlowFISH-validated RPN1 regulatory element 3 Neighboring gene transmembrane p24 trafficking protein 10 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128266479-128266979 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128285743-128286421 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128287100-128287778 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128287779-128288455 Neighboring gene uncharacterized LOC124909430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128309380-128309880 Neighboring gene Sharpr-MPRA regulatory region 3129 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128321651-128322150 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14708 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20484 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:128336746-128337257 Neighboring gene ribophorin I Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128363771-128364272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:128364273-128364772 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20488

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. [Structural features of GR6 gene and its expression in colorectal neoplasm]. Lin J, et al. Zhejiang Da Xue Xue Bao Yi Xue Ban, 2004 Mar. PMID 15067727
  2. Activation of a novel gene in 3q21 and identification of intergenic fusion transcripts with ecotropic viral insertion site I in leukemia. Pekarsky Y, et al. Cancer Res, 1997 Sep 15. PMID 9307271
  3. Multiple loci are associated with white blood cell phenotypes. Nalls MA, et al. PLoS Genet, 2011 Jun. PMID 21738480, Free PMC Article
  4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • putative GR6 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125802.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC080005, AF008192
    Related
    ENST00000356020.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    128572000..128576086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    131313560..131317646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_007354.2: Suppressed sequence

    Description
    NM_007354.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O15544.1 GenPept UniProtKB/Swiss-Prot:O15544

Gene LinkOut

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