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LINC01565 long intergenic non-protein coding RNA 1565 [ Homo sapiens (human) ]

Gene ID: 23434, updated on 11-Jun-2021

Summary

Official Symbol
LINC01565provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1565provided by HGNC
Primary source
HGNC:HGNC:17099
See related
Ensembl:ENSG00000198685 MIM:618259
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GR6; C3orf27
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See LINC01565 in Genome Data Viewer
Location:
3q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (128572000..128576086, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (128290843..128294929, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene CRISPRi-FlowFISH-validated RPN1 regulatory element Neighboring gene transmembrane p24 trafficking protein 10 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 3129 Neighboring gene ribophorin I

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Other Names

  • putative GR6 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125802.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC080005, AF008192
    Related
    ENST00000356020.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    128572000..128576086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_007354.2: Suppressed sequence

    Description
    NM_007354.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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