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Prr12 proline rich 12 [ Mus musculus (house mouse) ]

Gene ID: 233210, updated on 5-May-2024

Summary

Official Symbol
Prr12provided by MGI
Official Full Name
proline rich 12provided by MGI
Primary source
MGI:MGI:2679002
See related
Ensembl:ENSMUSG00000046574 AllianceGenome:MGI:2679002
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6720469B10
Summary
Predicted to enable DNA binding activity. Predicted to be located in neuron projection; nucleus; and synapse. Is expressed in central nervous system and retina. Orthologous to human PRR12 (proline rich 12). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 11.0), adrenal adult (RPKM 9.5) and 27 other tissues See more
Orthologs
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Genomic context

See Prr12 in Genome Data Viewer
Location:
7 B3; 7 29.08 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44677125..44702758, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (45027701..45053334, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene SR-related CTD-associated factor 1 Neighboring gene STARR-positive B cell enhancer ABC_E130 Neighboring gene STARR-positive B cell enhancer ABC_E871 Neighboring gene microRNA 7054 Neighboring gene related RAS viral (r-ras) oncogene Neighboring gene STARR-positive B cell enhancer ABC_E6541 Neighboring gene STARR-positive B cell enhancer ABC_E2235 Neighboring gene proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:52317657-52317840 Neighboring gene nitric oxide synthase interacting protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175022.3NP_778187.2  proline-rich protein 12

    Status: VALIDATED

    Source sequence(s)
    AC126256
    Consensus CDS
    CCDS52241.1
    UniProtKB/Swiss-Prot
    E9PYL2, Q69ZN8
    Related
    ENSMUSP00000054702.7, ENSMUST00000057293.8
    Conserved Domains (1) summary
    pfam13926
    Location:18271950
    DUF4211; Domain of unknown function (DUF4211)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    44677125..44702758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)