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Ccdc174 coiled-coil domain containing 174 [ Mus musculus (house mouse) ]

Gene ID: 232236, updated on 26-Sep-2022

Summary

Official Symbol
Ccdc174provided by MGI
Official Full Name
coiled-coil domain containing 174provided by MGI
Primary source
MGI:MGI:2444652
See related
Ensembl:ENSMUSG00000034083 AllianceGenome:MGI:2444652
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C130022K22Rik
Summary
Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human CCDC174 (coiled-coil domain containing 174). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 7.0), CNS E14 (RPKM 4.7) and 27 other tissues See more
Orthologs
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Genomic context

See Ccdc174 in Genome Data Viewer
Location:
6; 6 D1
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (91819983..91876830)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (91843154..91899849)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40387 Neighboring gene predicted gene, 30628 Neighboring gene solute carrier family 6 (neurotransmitter transporter, taurine), member 6 Neighboring gene glutamate receptor interacting protein 2 Neighboring gene RIKEN cDNA 4930590J08 gene Neighboring gene predicted gene, 53299

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Transgenic (1) 
  • Endonuclease-mediated (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 174

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172730.2NP_766318.2  coiled-coil domain-containing protein 174

    See identical proteins and their annotated locations for NP_766318.2

    Status: VALIDATED

    Source sequence(s)
    AC168852, AK039818, BC051147, BY624970
    Consensus CDS
    CCDS20370.2
    UniProtKB/Swiss-Prot
    Q3U155
    UniProtKB/TrEMBL
    A0A0R4J0L8
    Related
    ENSMUSP00000049280.6, ENSMUST00000037783.7
    Conserved Domains (2) summary
    PTZ00121
    Location:3329
    PTZ00121; MAEBL; Provisional
    pfam13300
    Location:230303
    DUF4078; Domain of unknown function (DUF4078)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    91819983..91876830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030255347.2XP_030111207.1  coiled-coil domain-containing protein 174 isoform X1

    UniProtKB/TrEMBL
    A0A0R4J0L8
    Conserved Domains (2) summary
    PTZ00121
    Location:3329
    PTZ00121; MAEBL; Provisional
    pfam13300
    Location:230303
    DUF4078; Domain of unknown function (DUF4078)
  2. XM_036166055.1XP_036021948.1  coiled-coil domain-containing protein 174 isoform X1

    UniProtKB/TrEMBL
    A0A0R4J0L8
    Conserved Domains (2) summary
    PTZ00121
    Location:3329
    PTZ00121; MAEBL; Provisional
    pfam13300
    Location:230303
    DUF4078; Domain of unknown function (DUF4078)
  3. XM_036166056.1XP_036021949.1  coiled-coil domain-containing protein 174 isoform X2

    Conserved Domains (2) summary
    PTZ00121
    Location:3328
    PTZ00121; MAEBL; Provisional
    pfam13300
    Location:230303
    DUF4078; Domain of unknown function (DUF4078)
  4. XM_030255348.2XP_030111208.1  coiled-coil domain-containing protein 174 isoform X3

    Conserved Domains (1) summary
    pfam13300
    Location:122195
    DUF4078; Domain of unknown function (DUF4078)