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Ahdc1 AT hook, DNA binding motif, containing 1 [ Mus musculus (house mouse) ]

Gene ID: 230793, updated on 8-Nov-2022

Summary

Official Symbol
Ahdc1provided by MGI
Official Full Name
AT hook, DNA binding motif, containing 1provided by MGI
Primary source
MGI:MGI:2444218
See related
Ensembl:ENSMUSG00000037692 AllianceGenome:MGI:2444218
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D030015G18Rik
Summary
Predicted to enable DNA binding activity. Is expressed in brain; embryo; and limb. Human ortholog(s) of this gene implicated in Xia-Gibbs Syndrome. Orthologous to human AHDC1 (AT-hook DNA binding motif containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 19.5), ovary adult (RPKM 13.3) and 25 other tissues See more
Orthologs
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Try the new Transcript table

Genomic context

See Ahdc1 in Genome Data Viewer
Location:
4; 4 D2.3
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (132738576..132805421)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (133011265..133078110)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene FGR proto-oncogene, Src family tyrosine kinase Neighboring gene predicted gene, 36599 Neighboring gene nuclear encoded tRNA glycine 1 (anticodon GCC) Neighboring gene WASP family, member 2 Neighboring gene microRNA 7017

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC29331

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables promoter-enhancer loop anchoring activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in mesoderm formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in mesoderm formation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in skin morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in skin morphogenesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
transcription factor Gibbin; AT-hook DNA-binding motif-containing protein 1
Names
a.T hook DNA-binding motif-containing protein 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404130.1NP_001391059.1  transcription factor Gibbin isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL627184
    UniProtKB/Swiss-Prot
    Q8VCU7
  2. NM_001404131.1NP_001391060.1  transcription factor Gibbin isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL627184
    UniProtKB/Swiss-Prot
    Q8VCU7
  3. NM_001404132.1NP_001391061.1  transcription factor Gibbin isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL627184
    UniProtKB/Swiss-Prot
    Q8VCU7
  4. NM_001404133.1NP_001391062.1  transcription factor Gibbin isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL627184
    UniProtKB/Swiss-Prot
    Q8VCU7
  5. NM_146155.3NP_666267.3  transcription factor Gibbin isoform 1

    See identical proteins and their annotated locations for NP_666267.3

    Status: VALIDATED

    Source sequence(s)
    AK149347, AL627184, BC060231
    Consensus CDS
    CCDS38900.1
    UniProtKB/Swiss-Prot
    Q6PAL7, Q8VCU7
    Related
    ENSMUSP00000101536.2, ENSMUST00000105916.8
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    132738576..132805421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538737.2XP_006538800.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6PAL7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  2. XM_006538740.3XP_006538803.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6PAL7
    Related
    ENSMUSP00000101535.2, ENSMUST00000105915.8
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  3. XM_030253465.2XP_030109325.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  4. XM_006538738.5XP_006538801.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6PAL7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  5. XM_011250231.2XP_011248533.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011248533.1

    UniProtKB/Swiss-Prot
    Q6PAL7, Q8VCU7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  6. XM_006538739.2XP_006538802.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006538802.1

    UniProtKB/Swiss-Prot
    Q6PAL7, Q8VCU7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  7. XM_006538734.2XP_006538797.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006538797.1

    UniProtKB/Swiss-Prot
    Q6PAL7, Q8VCU7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  8. XM_006538742.2XP_006538805.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006538805.1

    UniProtKB/Swiss-Prot
    Q6PAL7, Q8VCU7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  9. XM_030253464.2XP_030109324.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8VCU7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  10. XM_006538736.4XP_006538799.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006538799.1

    UniProtKB/Swiss-Prot
    Q6PAL7, Q8VCU7
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)
  11. XM_036164065.1XP_036019958.1  AT-hook DNA-binding motif-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8VCU7
    Related
    ENSMUSP00000101534.2, ENSMUST00000105914.2
    Conserved Domains (2) summary
    PHA03247
    Location:8571069
    PHA03247; large tegument protein UL36; Provisional
    pfam15735
    Location:591639
    DUF4683; Domain of unknown function (DUF4683)