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UHRF1BP1L UHRF1 binding protein 1 like [ Homo sapiens (human) ]

Gene ID: 23074, updated on 5-Sep-2021

Summary

Official Symbol
UHRF1BP1Lprovided by HGNC
Official Full Name
UHRF1 binding protein 1 likeprovided by HGNC
Primary source
HGNC:HGNC:29102
See related
Ensembl:ENSG00000111647
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SHIP164
Expression
Ubiquitous expression in brain (RPKM 7.5), thyroid (RPKM 4.4) and 24 other tissues See more
Orthologs
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Genomic context

See UHRF1BP1L in Genome Data Viewer
Location:
12q23.1
Exon count:
26
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (100026251..100142874, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (100430850..100536652, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1B Neighboring gene family with sequence similarity 71 member C Neighboring gene ribosomal protein S4X pseudogene 1 Neighboring gene RNA, 7SL, cytoplasmic 176, pseudogene Neighboring gene GOLGA2 pseudogene 5 Neighboring gene dynamin 1 pseudogene 19

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0701

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GARP complex binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in early endosome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
UHRF1-binding protein 1-like
Names
UHRF1 (ICBP90) binding protein 1-like
syntaxin 6Habc-interacting protein of 164 kDa
syntaxin-6 Habc-interacting protein of 164 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006947.2NP_001006948.1  UHRF1-binding protein 1-like isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding region compared to variant 1, that causes a frameshift. The resulting isoform (b) is shorter and has a distinct C-terminus compared to isoform a.
    Source sequence(s)
    AB014601, AC010203, BC014891, CB988442
    Consensus CDS
    CCDS31883.1
    UniProtKB/Swiss-Prot
    A0JNW5
    Related
    ENSP00000349285.3, ENST00000356828.7
    Conserved Domains (1) summary
    pfam12624
    Location:396
    Chorein_N; N-terminal region of Chorein or VPS13
  2. NM_015054.2NP_055869.1  UHRF1-binding protein 1-like isoform a

    See identical proteins and their annotated locations for NP_055869.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AB014601, AC010203, AC126474, AL136821, CB988442
    Consensus CDS
    CCDS31882.1
    UniProtKB/Swiss-Prot
    A0JNW5
    Related
    ENSP00000279907.7, ENST00000279907.12
    Conserved Domains (1) summary
    pfam12624
    Location:387
    Chorein_N; N-terminal region of Chorein or VPS13

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    100026251..100142874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017019047.1XP_016874536.1  UHRF1-binding protein 1-like isoform X1

  2. XM_005268738.3XP_005268795.1  UHRF1-binding protein 1-like isoform X2

  3. XM_005268739.4XP_005268796.1  UHRF1-binding protein 1-like isoform X3

    Conserved Domains (1) summary
    pfam12624
    Location:387
    Chorein_N; N-terminal region of Chorein or VPS13
  4. XM_017019050.2XP_016874539.1  UHRF1-binding protein 1-like isoform X6

    Related
    ENSP00000444824.2, ENST00000545232.6
  5. XM_017019048.2XP_016874537.1  UHRF1-binding protein 1-like isoform X4

  6. XM_017019051.2XP_016874540.1  UHRF1-binding protein 1-like isoform X6

  7. XM_011538054.3XP_011536356.1  UHRF1-binding protein 1-like isoform X7

  8. XM_017019049.1XP_016874538.1  UHRF1-binding protein 1-like isoform X5

RNA

  1. XR_001748630.1 RNA Sequence

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