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Efcab7 EF-hand calcium binding domain 7 [ Mus musculus (house mouse) ]

Gene ID: 230500, updated on 7-Oct-2019

Summary

Official Symbol
Efcab7provided by MGI
Official Full Name
EF-hand calcium binding domain 7provided by MGI
Primary source
MGI:MGI:2385199
See related
Ensembl:ENSMUSG00000073791
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA1799
Annotation information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly
Expression
Broad expression in CNS E11.5 (RPKM 2.9), testis adult (RPKM 2.1) and 17 other tissues See more
Orthologs

Genomic context

See Efcab7 in Genome Data Viewer
Location:
4; 4 C6
Exon count:
13
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (99829500..99912785)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (99550648..99585390)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase) Neighboring gene integrin beta 3 binding protein (beta3-endonexin) Neighboring gene U4 spliceosomal RNA Neighboring gene cDNA sequence BC062258 Neighboring gene phosphoglucomutase 1 Neighboring gene predicted gene, 35701

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Homology

Clone Names

  • MGC28352, MGC118010

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
ciliary membrane IDA
Inferred from Direct Assay
more info
PubMed 
extrinsic component of membrane IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane protein complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
EF-hand calcium-binding domain-containing protein 7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145549.1NP_663524.1  EF-hand calcium-binding domain-containing protein 7

    See identical proteins and their annotated locations for NP_663524.1

    Status: PROVISIONAL

    Source sequence(s)
    BC020077
    UniProtKB/Swiss-Prot
    Q8VDY4
    Related
    ENSMUSP00000118989.2, ENSMUST00000136874.2
    Conserved Domains (3) summary
    PTZ00183
    Location:21171
    PTZ00183; centrin; Provisional
    cd00051
    Location:106166
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl08302
    Location:407467
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p6 C57BL/6J

    Range
    99829500..99912785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p6 PATCHES

Genomic

  1. NW_019168509.1 Reference GRCm38.p6 PATCHES

    Range
    203954..256199
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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