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Rsbn1 rosbin, round spermatid basic protein 1 [ Mus musculus (house mouse) ]

Gene ID: 229675, updated on 12-May-2024

Summary

Official Symbol
Rsbn1provided by MGI
Official Full Name
rosbin, round spermatid basic protein 1provided by MGI
Primary source
MGI:MGI:2444993
See related
Ensembl:ENSMUSG00000044098 AllianceGenome:MGI:2444993
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
KDM9; Rsbn; Rsbp; Rosbin; mKIAA3002; E330004N01; C230004D03Rik
Summary
Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within chromatin organization. Located in nucleus. Is expressed in metanephros; oviduct; testis; and thymus. Orthologous to human RSBN1 (round spermatid basic protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 6.9), whole brain E14.5 (RPKM 5.4) and 27 other tissues See more
Orthologs
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Genomic context

See Rsbn1 in Genome Data Viewer
Location:
3 F2.2; 3 45.52 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (103821412..103873952)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (103914090..103966638)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7934 Neighboring gene STARR-seq mESC enhancer starr_08603 Neighboring gene BCLl2-like 15 Neighboring gene STARR-positive B cell enhancer ABC_E3458 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:103663204-103663387 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:103664081-103664275 Neighboring gene STARR-positive B cell enhancer ABC_E6094 Neighboring gene STARR-positive B cell enhancer ABC_E2090 Neighboring gene protein tyrosine phosphatase, non-receptor type 22 (lymphoid) Neighboring gene STARR-seq mESC enhancer starr_08604 Neighboring gene STARR-positive B cell enhancer ABC_E9222 Neighboring gene STARR-positive B cell enhancer mm9_chr3:103718150-103718451 Neighboring gene putative homeodomain transcription factor 1, opposite strand Neighboring gene STARR-seq mESC enhancer starr_08605 Neighboring gene putative homeodomain transcription factor 1 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_08606 Neighboring gene predicted gene, 17956

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 
enables histone H4K20 demethylase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
lysine-specific demethylase 9
Names
round spermatid basic protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356556.1NP_001343485.1  lysine-specific demethylase 9 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC124698, AC162922
    Consensus CDS
    CCDS17697.1
    UniProtKB/Swiss-Prot
    B0V3N6, B9EI66, Q3UUB5, Q4VC18, Q7TNJ3, Q80T69, Q8C2Z3
    Related
    ENSMUSP00000058934.8, ENSMUST00000051139.13
  2. NM_001356557.1NP_001343486.1  lysine-specific demethylase 9 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC124698, AC162922
  3. NM_001356558.1NP_001343487.1  lysine-specific demethylase 9 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC124698, AC162922
  4. NM_172684.3NP_766272.2  lysine-specific demethylase 9 isoform 1

    See identical proteins and their annotated locations for NP_766272.2

    Status: VALIDATED

    Source sequence(s)
    AC124698, AC162922, AK138603
    Consensus CDS
    CCDS17697.1
    UniProtKB/Swiss-Prot
    B0V3N6, B9EI66, Q3UUB5, Q4VC18, Q7TNJ3, Q80T69, Q8C2Z3
    Related
    ENSMUSP00000069246.5, ENSMUST00000068879.11

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    103821412..103873952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036163074.1XP_036018967.1  lysine-specific demethylase 9 isoform X1

    UniProtKB/TrEMBL
    D6RG56

RNA

  1. XR_004941313.1 RNA Sequence