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LINC00518 long intergenic non-protein coding RNA 518 [ Homo sapiens (human) ]

Gene ID: 221718, updated on 23-Nov-2021

Summary

Official Symbol
LINC00518provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 518provided by HGNC
Primary source
HGNC:HGNC:28626
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf218
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00518 in Genome Data Viewer
Location:
6p24.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (10427785..10434822, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (10428018..10435055, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene transcription factor AP-2 alpha Neighboring gene TFAP2A antisense RNA 2 Neighboring gene TFAP2A antisense RNA 1 Neighboring gene uncharacterized LOC107986564 Neighboring gene MIR5689 host gene Neighboring gene microRNA 5689 Neighboring gene mitochondrial ribosomal protein L48 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027793.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL138885, BC016666

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    10427785..10434822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152738.1: Suppressed sequence

    Description
    NM_152738.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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