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CCDC162P coiled-coil domain containing 162, pseudogene [ Homo sapiens (human) ]

Gene ID: 221262, updated on 21-Dec-2019

Summary

Official Symbol
CCDC162Pprovided by HGNC
Official Full Name
coiled-coil domain containing 162, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:21565
See related
Ensembl:ENSG00000203799
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCDC162; C6orf183; C6orf184; C6orf185
Summary
This gene is the ortholog of the mouse coiled-coil domain containing 162 gene. This locus is transcribed, but is represented as a unitary pseudogene because there are multiple changes in the coding sequence, including multiple changes that result in premature stop codons, relative to the mouse coding sequence. Transcripts from this locus are expected to encode truncated proteins, and may be candidates for nonsense-mediated decay (NMD). [provided by RefSeq, Sep 2018]
Expression
Biased expression in colon (RPKM 1.8), testis (RPKM 1.4) and 11 other tissues See more
Orthologs

Genomic context

See CCDC162P in Genome Data Viewer
Location:
6q21
Exon count:
46
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (109165831..109354948)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (109615506..109629423)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 2 Neighboring gene ARMC2 antisense RNA 1 Neighboring gene sestrin 1 Neighboring gene RNA, U6 small nuclear 653, pseudogene Neighboring gene centrosomal protein 57 like 1 Neighboring gene patched domain containing 3 pseudogene 3 Neighboring gene uncharacterized LOC101927538 Neighboring gene RNY3 pseudogene 11 Neighboring gene ribosomal protein L7 pseudogene 28 Neighboring gene CD164 molecule Neighboring gene peptidylprolyl isomerase like 6 Neighboring gene sphingomyelin phosphodiesterase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.
NHGRI GWA Catalog
Seventy-five genetic loci influencing the human red blood cell.
NHGRI GWA Catalog

General gene information

Markers

Homology

Clone Names

  • FLJ37396, MGC129804, MGC149201

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152435.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK094715, AL355305, AL359711, AL359712, BC107113, BC128119, BG572220, CR735618, DV080116, DY655452, EB710335
    Related
    ENST00000368966.10

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    109165831..109354948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001277339.1: Suppressed sequence

    Description
    NM_001277339.1: This RefSeq was removed because currently it is thought that this locus represents a unitary pseudogene.
  2. NM_173671.1: Suppressed sequence

    Description
    NM_173671.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
  3. NR_028595.1: Suppressed sequence

    Description
    NR_028595.1: This RefSeq was removed because currently there is insufficient support for the transcript.
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