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SHANK2-AS3 SHANK2 antisense RNA 3 [ Homo sapiens (human) ]

Gene ID: 220070, updated on 1-Jun-2020

Summary

Official Symbol
SHANK2-AS3provided by HGNC
Official Full Name
SHANK2 antisense RNA 3provided by HGNC
Primary source
HGNC:HGNC:25098
See related
Ensembl:ENSG00000171671
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C11orf76
Expression
Low expression observed in reference dataset See more

Genomic context

See SHANK2-AS3 in Genome Data Viewer
Location:
11q13.4
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (70862790..70865115)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (70708895..70711220)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene SH3 and multiple ankyrin repeat domains 2 Neighboring gene Sharpr-MPRA regulatory region 3810 Neighboring gene SHANK2 antisense RNA 1 Neighboring gene microRNA 3664 Neighboring gene actin epsilon 1, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073536.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC004224
    Related
    ENST00000307548.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    70862790..70865115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_145308.2: Suppressed sequence

    Description
    NM_145308.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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